6GH9
USP15 catalytic domain in complex with small molecule
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97951 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.070, 94.390, 63.290 |
Unit cell angles | 90.00, 90.08, 90.00 |
Refinement procedure
Resolution | 62.070 - 2.090 |
R-factor | 0.2052 |
Rwork | 0.203 |
R-free | 0.25170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2y6e |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.070 | 62.070 | 2.140 |
High resolution limit [Å] | 2.090 | 9.350 | 2.090 |
Rmerge | 0.102 | 0.027 | 1.619 |
Rmeas | 0.115 | 0.031 | 1.815 |
Rpim | 0.052 | 0.015 | 0.807 |
Total number of observations | 203657 | ||
Number of reflections | 42810 | 501 | 3153 |
<I/σ(I)> | 9.9 | ||
Completeness [%] | 99.1 | 98.3 | 98.6 |
Redundancy | 4.8 | 4.5 | 4.9 |
CC(1/2) | 0.998 | 0.999 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 0.1 M Hepes pH 7.0, 14% MPD |