6FKZ
Crystal structure of zebrafish Sirtuin 5 in complex with 3-(phenylthio)succinyl-CPS1 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 87.220, 87.220, 318.850 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.730 - 3.300 |
R-factor | 0.22517 |
Rwork | 0.222 |
R-free | 0.28431 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4utv |
RMSD bond length | 0.012 |
RMSD bond angle | 1.695 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.390 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmeas | 0.393 | 1.218 |
Number of reflections | 10989 | 1671 |
<I/σ(I)> | 5 | 1.4 |
Completeness [%] | 99.5 | 99.3 |
Redundancy | 4.1 | 4.3 |
CC(1/2) | 0.938 | 0.496 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M HEPES pH 7.4, 20% PEG3350 |