6F59
Crystal structure of human Brachyury (T) G177D variant in complex with DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.92 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 75.270, 75.270, 288.468 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.831 - 2.151 |
R-factor | 0.2229 |
Rwork | 0.221 |
R-free | 0.25200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xbr |
RMSD bond length | 0.008 |
RMSD bond angle | 0.963 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 144.230 | 2.210 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.114 | 2.618 |
Rmeas | 0.117 | 2.677 |
Rpim | 0.024 | 0.550 |
Number of reflections | 46387 | 3687 |
<I/σ(I)> | 12.9 | 1.2 |
Completeness [%] | 99.9 | 98.7 |
Redundancy | 25.5 | 23.1 |
CC(1/2) | 0.997 | 0.777 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 56% MPD -- 0.1M SPG pH 6.0 |