6F29
Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with (S)-1-[2-Amino-2-carboxyethyl]-5,7-dihydrothieno[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 2.6A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-06-24 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 68.040, 68.040, 126.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.915 - 2.600 |
R-factor | 0.1947 |
Rwork | 0.192 |
R-free | 0.24810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mh5 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.922 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.915 | 35.915 | 2.740 |
High resolution limit [Å] | 2.600 | 8.220 | 2.600 |
Rmerge | 0.044 | 0.433 | |
Rmeas | 0.116 | 0.047 | 0.463 |
Rpim | 0.041 | 0.017 | 0.160 |
Number of reflections | 9697 | 363 | 1383 |
<I/σ(I)> | 13.5 | 11.6 | 1.8 |
Completeness [%] | 99.8 | 97.9 | 100 |
Redundancy | 7.7 | 6.4 | 7.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.2 | 279 | 1.8M sodium/potassium phosphate pH 8.2 |