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6DO3

KLHDC2 ubiquitin ligase in complex with SelK C-end degron

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2016-12-07
DetectorADSC QUANTUM 315r
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths44.816, 87.779, 88.626
Unit cell angles90.00, 104.49, 90.00
Refinement procedure
Resolution43.391 - 2.165
R-factor0.1691
Rwork0.166
R-free0.22320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2vpj
RMSD bond length0.008
RMSD bond angle1.160
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.190
High resolution limit [Å]2.1505.8302.150
Rmerge0.1680.0840.598
Rmeas0.1820.0910.679
Rpim0.0690.0360.316
Number of reflections3512518171759
<I/σ(I)>6.4
Completeness [%]99.999.899.2
Redundancy6.96.74.3
CC(1/2)0.9950.772
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298.150.03M MgCl2*6H2O, 0.03M CaCl2*2H2O, 0.05M Imidazole, 0.05M MES monohydrate, 12.5% v/v MPD, 12.5% PEG1000, 12.5% w/v PEG3350, pH 6.5.

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PDB entries from 2024-05-15

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