6BEF
Crystal structure of VACV D13 in complex with 3-formyl rifamycin SV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-02 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.953700 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 191.060, 191.060, 254.320 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.960 - 3.210 |
R-factor | 0.197 |
Rwork | 0.195 |
R-free | 0.22100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 3SAM |
RMSD bond length | 0.007 |
RMSD bond angle | 0.920 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | BUSTER |
Refinement software | BUSTER |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.960 | 19.960 | 3.290 |
High resolution limit [Å] | 3.210 | 14.340 | 3.210 |
Rmerge | 0.326 | 0.056 | 1.718 |
Rmeas | 0.337 | 0.058 | 1.777 |
Number of reflections | 45431 | 596 | 3287 |
<I/σ(I)> | 10.8 | 34.83 | 1.94 |
Completeness [%] | 99.9 | 96.4 | 99.8 |
Redundancy | 15.325 | 12.107 | 15.412 |
CC(1/2) | 0.991 | 0.999 | 0.631 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 298 | 3.5-4.0 M sodium formate and 0.1 M citric acid |