6A8R
Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-30 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.9785 |
Spacegroup name | P 31 |
Unit cell lengths | 32.550, 32.550, 126.591 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.189 - 1.600 |
R-factor | 0.2008 |
Rwork | 0.201 |
R-free | 0.20730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5z2s 5z2t |
RMSD bond length | 0.013 |
RMSD bond angle | 1.227 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.300 | 1.690 |
High resolution limit [Å] | 1.600 | 1.600 |
Number of reflections | 19696 | 2803 |
<I/σ(I)> | 11.4 | |
Completeness [%] | 99.2 | |
Redundancy | 8.2 | |
CC(1/2) | 0.990 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | PEG 1000 |