5XNW
Crystal structure of ExoY, a unique nucleotidyl cyclase toxin from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-05-31 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97885 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 92.621, 92.621, 66.022 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.496 - 2.201 |
R-factor | 0.1937 |
Rwork | 0.190 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1k8t |
RMSD bond length | 0.002 |
RMSD bond angle | 0.431 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 (2000) |
Phasing software | MR-Rosetta |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.101 | 0.040 | 0.872 |
Rmeas | 0.107 | 0.043 | 0.927 |
Rpim | 0.035 | 0.015 | 0.310 |
Number of reflections | 26721 | ||
<I/σ(I)> | 8.8 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 9.4 | 8.4 | 8.7 |
CC(1/2) | 0.994 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 295.15 | 1.5M Lithium Sulphate, 0.1M HEPES |