5X7X
The crystal structure of the nucleosome containing H3.3 at 2.18 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-19 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 98.887, 107.509, 167.415 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.600 - 2.184 |
R-factor | 0.2279 |
Rwork | 0.227 |
R-free | 0.25560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cv5 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.818 |
Data reduction software | HKL |
Data scaling software | HKL-2000 (2.3.10) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.260 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.081 | 0.483 |
Number of reflections | 92136 | |
<I/σ(I)> | 10.7 | 3.5 |
Completeness [%] | 99.5 | 98.9 |
Redundancy | 14.2 | 8.9 |
CC(1/2) | 0.531 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | potassium cacodylate, potassium chloride, manganese chloride |