5X3S
Crystal structure of mouse Plk1-PBD in complex with phosphopeptide from HEF1 (799-809)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-21 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.564, 59.402, 72.748 |
Unit cell angles | 90.00, 99.47, 90.00 |
Refinement procedure
Resolution | 33.930 - 2.899 |
R-factor | 0.2045 |
Rwork | 0.203 |
R-free | 0.24410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hik |
RMSD bond length | 0.004 |
RMSD bond angle | 0.662 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.900 | 6.240 | 2.900 |
Rmerge | 0.152 | 0.114 | 0.272 |
Rmeas | 0.182 | 0.133 | 0.355 |
Rpim | 0.097 | 0.066 | 0.225 |
Total number of observations | 23782 | ||
Number of reflections | 9198 | ||
<I/σ(I)> | 5.6 | ||
Completeness [%] | 84.4 | 91.4 | 67.3 |
Redundancy | 2.6 | 3.5 | 1.7 |
CC(1/2) | 0.982 | 0.617 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 15% PEG 6000, 0.1M sodium citrate |