Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WS2

Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-10-23
DetectorPSI PILATUS 6M
Wavelength(s)0.97776
Spacegroup nameP 65 2 2
Unit cell lengths168.610, 168.610, 165.868
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.674 - 2.398
R-factor0.1745
Rwork0.173
R-free0.20850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hab
RMSD bond length0.009
RMSD bond angle1.182
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.440
High resolution limit [Å]2.4002.400
Rmerge0.1720.763
Number of reflections54889
<I/σ(I)>17.35
Completeness [%]100.0100
Redundancy16.517.2
CC(1/2)0.9970.903
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72980.01M MgSO4, 0.05M Sodium cacodylate trihydrate, 2M (NH4)2SO4

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon