5WPK
Structure of the class II 3-hydroxy-3-methylglutaryl-CoA reductase from Streptococcus pneumoniae bound to HMG-CoA and in a partially closed conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 90 |
Detector technology | PIXEL |
Collection date | 2017-07-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.865, 131.248, 57.957 |
Unit cell angles | 90.00, 102.54, 90.00 |
Refinement procedure
Resolution | 19.241 - 2.300 |
R-factor | 0.187 |
Rwork | 0.177 |
R-free | 0.23330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qae |
RMSD bond length | 0.003 |
RMSD bond angle | 0.627 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.241 | 2.382 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.151 | 0.583 |
Number of reflections | 36792 | 3643 |
<I/σ(I)> | 6.48 | 1.84 |
Completeness [%] | 98.2 | 97.98 |
Redundancy | 3.5 | 3.5 |
CC(1/2) | 0.987 | 0.676 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 295 | 100 mM Tris, pH 8.5, 100-250 mM lithium sulfate, 15-25% PEG4000 |