5WGK
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HPB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 51.670, 83.970, 94.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.883 - 1.822 |
R-factor | 0.1502 |
Rwork | 0.149 |
R-free | 0.17310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eem |
RMSD bond length | 0.011 |
RMSD bond angle | 0.855 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.790 | |
High resolution limit [Å] | 1.820 | 1.820 |
Number of reflections | 37115 | |
<I/σ(I)> | 11.7 | |
Completeness [%] | 99.1 | |
Redundancy | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | ammonium iodide, PEG3350 |