Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WFD

Humanized mutant of the Chaetomium thermophilum Polycomb Repressive Complex 2 bound to the inhibitor GSK126

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]93
Detector technologyPIXEL
Collection date2017-06-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.979
Spacegroup nameC 2 2 21
Unit cell lengths117.534, 136.971, 223.583
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.146 - 2.654
R-factor0.1836
Rwork0.181
R-free0.24020
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5bjs
RMSD bond length0.012
RMSD bond angle1.107
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11.1_2575))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.700
High resolution limit [Å]2.6542.654
Rmerge0.2133.146
Rpim0.0660.975
Number of reflections521882541
<I/σ(I)>14.6
Completeness [%]100.0100
Redundancy11.411.1
CC(1/2)0.8820.535
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298100 mM sodium malonate pH 7.0, 16% PEG 3350, 43 mM 3-cyclohexyl-1-propylphosphocholine

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon