5VXZ
High-affinity AXL decoy receptor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-04-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.220, 80.470, 249.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.610 - 2.300 |
R-factor | 0.2008 |
Rwork | 0.198 |
R-free | 0.24720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2c5d |
RMSD bond length | 0.018 |
RMSD bond angle | 1.995 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.610 | 2.360 | |
High resolution limit [Å] | 2.300 | 10.290 | 2.300 |
Rmerge | 0.069 | 0.030 | 0.886 |
Number of reflections | 69824 | ||
<I/σ(I)> | 20.14 | 54.69 | 1.67 |
Completeness [%] | 99.6 | 97.6 | 97.9 |
Redundancy | 10.7 | 4.1 | |
CC(1/2) | 0.999 | 1.000 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.4 | 295 | 0.7 M Li2SO4, 0.1 M Tris.HCl (pH 8.4) |