5VW1
Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-23 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 72.194, 101.242, 303.563 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.021 - 2.598 |
R-factor | 0.1805 |
Rwork | 0.178 |
R-free | 0.22610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zt0 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.053 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.690 |
High resolution limit [Å] | 2.598 | 5.600 | 2.600 |
Rmerge | 0.092 | 0.042 | 0.497 |
Rmeas | 0.104 | 0.048 | 0.574 |
Rpim | 0.048 | 0.021 | 0.276 |
Number of reflections | 65656 | ||
<I/σ(I)> | 7.1 | ||
Completeness [%] | 94.6 | 97.8 | 72.1 |
Redundancy | 4.3 | 4.8 | 3.4 |
CC(1/2) | 0.999 | 0.805 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.2 | 293 | 0.1 M HEPES (pH 7.5), and 15% PEG3350 (v/v) |