5VI6
Crystal structure of histone deacetylase 8 in complex with trapoxin A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 32 |
Unit cell lengths | 50.980, 50.980, 116.517 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.286 - 1.237 |
R-factor | 0.1224 |
Rwork | 0.121 |
R-free | 0.14330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ewf |
RMSD bond length | 0.009 |
RMSD bond angle | 1.033 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 44.150 |
High resolution limit [Å] | 1.237 |
Rmerge | 0.046 |
Rpim | 0.035 |
Number of reflections | 95873 |
<I/σ(I)> | 13.7 |
Completeness [%] | 99.1 |
Redundancy | 4.8 |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 35% dioxane |