5VD7
CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH RAC-IV-098, a MK1775 analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-17 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.190, 44.550, 64.640 |
Unit cell angles | 90.00, 102.05, 90.00 |
Refinement procedure
Resolution | 32.988 - 2.080 |
Rwork | 0.207 |
R-free | 0.24790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v5y |
RMSD bond length | 0.005 |
RMSD bond angle | 0.875 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.988 | 32.988 | 2.130 |
High resolution limit [Å] | 2.080 | 9.300 | 2.080 |
Rmerge | 0.045 | 0.029 | 0.306 |
Rmeas | 0.053 | 0.035 | 0.358 |
Number of reflections | 16808 | 196 | 1219 |
<I/σ(I)> | 17.79 | 39.07 | 4.15 |
Completeness [%] | 98.6 | 92.9 | 97.1 |
Redundancy | 3.716 | 3.224 | 3.673 |
CC(1/2) | 0.999 | 0.998 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 291 | 5.0 MG/ML WEE1, 25 mM Na/K phosphate, 1 mM DTT, 0.05 M ammonium sulfate, 0.05 M Bis-tris (pH 5.5), 7.5 % PEG 3350, 1 mM RAC-IV-098 |