5VBR
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRDT IN COMPLEX WITH Volasertib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.450, 31.050, 69.800 |
Unit cell angles | 90.00, 97.09, 90.00 |
Refinement procedure
Resolution | 69.267 - 1.900 |
Rwork | 0.155 |
R-free | 0.20120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kcx |
RMSD bond length | 0.006 |
RMSD bond angle | 1.014 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.267 | 69.267 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.078 | 0.023 | 0.417 |
Rmeas | 0.092 | 0.028 | 0.489 |
Number of reflections | 22421 | 283 | 1652 |
<I/σ(I)> | 15.45 | 38.03 | 3.68 |
Completeness [%] | 99.7 | 97.9 | 99.9 |
Redundancy | 3.7 | 3.191 | 3.719 |
CC(1/2) | 0.997 | 0.999 | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 8 MG/ML BRDT, 25MM HEPES PH 7.5, 75MM SODIUM CHLORIDE, 0.5MM DTT, 50MM MES PH 6.5, 0.1M AMMONIUM, SULFATE, 15% PEG MME 5,000, 10% DMSO, 1 MM Volasertib |