5US6
Structure of Dihydrodipicolinate Reductase from Vibrio vulnificus Bound to NADH and 2,6 Pyridine Dicarboxylic Acid with Intact Polyhistidine Tag
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-06-06 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 111.906, 115.845, 148.127 |
Unit cell angles | 90.00, 96.10, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.610 |
R-factor | 0.22907 |
Rwork | 0.228 |
R-free | 0.25684 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.754 |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.086 | 0.051 | 0.642 |
Rmeas | 0.103 | 0.062 | 0.760 |
Rpim | 0.056 | 0.034 | 0.404 |
Total number of observations | 326033 | ||
Number of reflections | 106437 | ||
<I/σ(I)> | 7 | ||
Completeness [%] | 93.4 | 91.2 | 93 |
Redundancy | 3.1 | 3 | 3.1 |
CC(1/2) | 0.995 | 0.873 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 1.26 M ammonium sulfate, 0.1 M HEPES pH 7.5 |