5U2H
Crystal structure of the ATP-gated P2X7 ion channel bound to ATP and allosteric antagonist A804598
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-14 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 3 |
Unit cell lengths | 167.618, 167.618, 167.618 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.387 - 3.903 |
R-factor | 0.3372 |
Rwork | 0.334 |
R-free | 0.38560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | A804598 bound P2X7 |
RMSD bond length | 0.001 |
RMSD bond angle | 0.484 |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.390 | 48.390 | 4.360 |
High resolution limit [Å] | 3.900 | 8.730 | 3.900 |
Rmerge | 0.115 | 0.028 | 1.062 |
Rmeas | 0.122 | ||
Rpim | 0.039 | ||
Total number of observations | 145035 | ||
Number of reflections | 14545 | ||
<I/σ(I)> | 15.4 | ||
Completeness [%] | 99.9 | 99.4 | 99.9 |
Redundancy | 10 | 9.1 | 10.3 |
CC(1/2) | 1.000 | 1.000 | 0.877 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 33% PEG 400, 100 mM MES (pH 6.5), 100 mM NaCl, 5% Glycerol, and 1 mM A804598 |