5TZT
Crystal structure of human CD47 ECD bound to Fab of C47B161
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-11-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.569, 60.974, 124.133 |
Unit cell angles | 90.00, 90.05, 90.00 |
Refinement procedure
Resolution | 41.378 - 2.890 |
R-factor | 0.2609 |
Rwork | 0.257 |
R-free | 0.32790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jjs |
RMSD bond length | 0.005 |
RMSD bond angle | 1.016 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.378 | 2.950 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.119 | 0.465 |
Number of reflections | 24865 | |
<I/σ(I)> | 6.9 | |
Completeness [%] | 98.6 | 90.9 |
Redundancy | 3.1 | 2.9 |
CC(1/2) | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 34% PEG 8000, 0.1M HEPES pH 7.5 |