5TWX
Crystal Structure of BRD9 bromodomain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-20 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 75.260, 75.260, 344.330 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.040 - 2.550 |
R-factor | 0.235 |
Rwork | 0.233 |
R-free | 0.27980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yyd |
RMSD bond length | 0.005 |
RMSD bond angle | 1.478 |
Data reduction software | XSCALE |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.040 | 64.060 | 2.590 |
High resolution limit [Å] | 2.550 | 6.920 | 2.550 |
Rmeas | 0.143 | 0.038 | 2.030 |
Rpim | 0.038 | 0.011 | 0.526 |
Total number of observations | 260441 | 13496 | 14100 |
Number of reflections | 19982 | 1165 | 989 |
<I/σ(I)> | 15.3 | 47.1 | 1.6 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 13 | 11.6 | 14.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | PEG 4000 |