5TFR
Crystal structure of Zika Virus NS5 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 136.013, 196.412, 94.983 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.660 - 3.050 |
R-factor | 0.191 |
Rwork | 0.188 |
R-free | 0.23700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k6m.pdb |
RMSD bond length | 0.010 |
RMSD bond angle | 1.140 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Refinement software | BUSTER-TNT (2.11.7) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 196.412 | 196.412 | 3.060 |
High resolution limit [Å] | 3.050 | 14.155 | 3.050 |
Rmeas | 0.230 | 0.068 | 1.064 |
Rpim | 0.088 | 0.028 | 0.423 |
Total number of observations | 330316 | 3371 | 3337 |
Number of reflections | 49315 | ||
<I/σ(I)> | 8 | 20.9 | 2 |
Completeness [%] | 100.0 | 100 | 97.8 |
Redundancy | 6.7 | 5.7 | 6.3 |
CC(1/2) | 0.994 | 0.998 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 290 | 0.1 M sodium cacodylate, pH 6.5, 0.6 M trisodium citrate |