5T6F
1.90 A resolution structure of Norovirus 3CL protease in complex with the dipeptidyl inhibitor 7l (orthorhombic P form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.511, 64.801, 125.371 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.937 - 1.900 |
R-factor | 0.1968 |
Rwork | 0.194 |
R-free | 0.24890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ur9 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.031 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.050 | 45.050 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.099 | 0.034 | 0.926 |
Total number of observations | 158261 | 1489 | 8926 |
Number of reflections | 24911 | ||
<I/σ(I)> | 13.7 | 42.9 | 2.1 |
Completeness [%] | 99.9 | 99.5 | 100 |
Redundancy | 6.4 | 5.2 | 5.8 |
CC(1/2) | 0.999 | 0.999 | 0.834 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% (w/v) PEG 3350, 200 mM sodium thiocyanate |