Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5T4Z

STRUCTURE OF THE ANTI-HIV ANTIBODY DH501 THAT BINDS GP120 V3 GLYCAN AND THE BASE OF V3 WITH FREE MAN9 GLYCAN

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]93
Detector technologyCCD
Collection date2016-08-22
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths49.757, 115.997, 76.889
Unit cell angles90.00, 97.39, 90.00
Refinement procedure
Resolution34.485 - 1.991
R-factor0.189
Rwork0.187
R-free0.23870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5iie
RMSD bond length0.009
RMSD bond angle1.186
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 Overall
Low resolution limit [Å]34.490
High resolution limit [Å]1.990
Rmerge0.060
Number of reflections58802
<I/σ(I)>28.4
Completeness [%]100.0
Redundancy3.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M CaCl2, 20% PEG 3350

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon