5OVE
Ras guanine nucleotide exchange factor SOS1 (Rem-cdc25) in complex with small molecule inhibitor compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-04 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.335, 85.260, 176.976 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.510 - 1.850 |
R-factor | 0.2754 |
Rwork | 0.273 |
R-free | 0.32307 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ii0 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.040 |
Data reduction software | XDS (VERSION Nov 1, 2016) |
Data scaling software | XDS (VERSION Nov 1, 2016) |
Phasing software | MOLREP (Version 11.5.02) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.510 | 1.960 |
High resolution limit [Å] | 1.850 | 1.850 |
Number of reflections | 54441 | 8568 |
<I/σ(I)> | 15.55 | 1.86 |
Completeness [%] | 99.6 | 98.5 |
Redundancy | 6.5 | 6.8 |
CC(1/2) | 0.998 | 0.606 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Protein concentration 30.7 mg/ml. Protein buffer 25 Millimolar TRIS-HCL PH 7.5, 50 millimolar NaCl, 1 millimolar DTT. Reservoir 25% (v/v) ethylenglycol. Protein incubated with 2 MILLIMOLAR LIGAND prior to crystallization. |