5OR9
Crystal Structure of BAZ2B bromodomain in complex with 1-methyl-cyclopentapyrazole compound 13
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.444, 96.646, 57.584 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.722 - 2.000 |
R-factor | 0.1885 |
Rwork | 0.187 |
R-free | 0.20840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dyu |
RMSD bond length | 0.006 |
RMSD bond angle | 0.800 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.320 | 48.320 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.078 | 0.036 | 0.668 |
Rmeas | 0.084 | 0.039 | 0.717 |
Rpim | 0.031 | 0.014 | 0.258 |
Number of reflections | 15678 | 208 | 1149 |
<I/σ(I)> | 14.5 | ||
Completeness [%] | 99.7 | 98.5 | 99.3 |
Redundancy | 7.2 | 6.7 | 7.5 |
CC(1/2) | 0.999 | 0.999 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 20% PEG500MME, 2% PEG1000, 2% PEG3350, 10% PEG20000, 2% MPD |