5O58
Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.1999 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 70.370, 88.340, 124.270 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.326 - 1.550 |
R-factor | 0.1592 |
Rwork | 0.158 |
R-free | 0.18350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o4z |
RMSD bond length | 0.006 |
RMSD bond angle | 0.811 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.000 | 1.590 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmeas | 0.037 | 0.828 |
Number of reflections | 106913 | 7687 |
<I/σ(I)> | 19.2 | 1.87 |
Completeness [%] | 98.4 | 95.4 |
Redundancy | 4.5 | 4.3 |
CC(1/2) | 0.999 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 293 | 20% (w/v) 2-propanol 0.1M sodium acetate pH4.6 0.2M CaCl2 |