5NQ0
Porcine (Sus scrofa) Major Histocompatibility Complex, class I, presenting DFEREGYSL
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 |
Unit cell lengths | 41.616, 46.340, 66.735 |
Unit cell angles | 104.36, 101.21, 102.20 |
Refinement procedure
Resolution | 39.270 - 1.100 |
R-factor | 0.18999 |
Rwork | 0.189 |
R-free | 0.20852 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qq3 |
RMSD bond length | 0.019 |
RMSD bond angle | 2.127 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.280 | 1.130 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.086 | 0.179 |
Number of reflections | 170825 | 11419 |
<I/σ(I)> | 6 | 1.1 |
Completeness [%] | 92.3 | 83.1 |
Redundancy | 1.9 | 1.7 |
CC(1/2) | 0.998 | 0.596 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | PACT screen, condition A09: 0.2 M LiCl, 0.1 M Sodium Acetate, pH 5.0, 20% PEG 6000 |