5NF0
Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-29 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000030 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.278, 99.966, 106.611 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.030 - 1.271 |
R-factor | 0.1639 |
Rwork | 0.163 |
R-free | 0.18450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1oxc |
RMSD bond length | 0.011 |
RMSD bond angle | 1.260 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.030 | 1.350 |
High resolution limit [Å] | 1.270 | 1.270 |
Rmeas | 0.058 | 0.615 |
Number of reflections | 120367 | 58803 |
<I/σ(I)> | 13.95 | 2.2 |
Completeness [%] | 94.1 | 88.8 |
Redundancy | 3.31 | |
CC(1/2) | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.005 M Cadmium chloride hydrate |