5MVD
Crystal structure of potent human Dihydroorotate Dehydrogenase inhibitors based on hydroxylated azole scaffolds
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-23 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.872 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 90.850, 90.850, 122.924 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.426 - 1.950 |
R-factor | 0.1689 |
Rwork | 0.167 |
R-free | 0.20160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ylw |
RMSD bond length | 0.016 |
RMSD bond angle | 1.400 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.679 | 6.170 | 2.060 |
High resolution limit [Å] | 1.950 | 4.360 | 1.950 |
Rmerge | 0.079 | 0.752 | |
Rmeas | 0.213 | 0.084 | 0.797 |
Rpim | 0.069 | 0.028 | 0.260 |
Number of reflections | 43390 | ||
<I/σ(I)> | 9.2 | 8.6 | 1 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 9.3 | 8.9 | 9.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.2M KBr, 0.2M KSCN, 0.1M NaAc pH 5.2, 35% PEG 400, 5% PGA-LM |