Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5L9V

HIF prolyl hydroxylase 2 (PHD2-R281C/P317C) cross-linked to HIF-1alpha NODD-L397C/D412C and N-oxalylglycine (NOG) (complex-1)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyCCD
Collection date2011-11-04
DetectorADSC QUANTUM 315r
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths43.807, 73.088, 70.407
Unit cell angles90.00, 91.17, 90.00
Refinement procedure
Resolution43.798 - 1.829
R-factor0.1705
Rwork0.169
R-free0.19040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3hqr
RMSD bond length0.005
RMSD bond angle0.711
Data reduction softwareHKL-2000 (706E)
Data scaling softwareHKL-2000 (706E)
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.7981.900
High resolution limit [Å]1.8291.829
Rmerge0.1010.908
Number of reflections38965
<I/σ(I)>11.33752
Completeness [%]99.7100
Redundancy3.63.7
CC(1/2)0.997
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52930.2 M ammonium chloride, 20 % w/v polyethylene glycol 3350

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon