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5L9V

HIF prolyl hydroxylase 2 (PHD2-R281C/P317C) cross-linked to HIF-1alpha NODD-L397C/D412C and N-oxalylglycine (NOG) (complex-1)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Egl nine homolog 1polymer25227930.72UniProt (Q9GZT9)
Pfam (PF13640)
Homo sapiens (Human)Hypoxia-inducible factor prolyl hydroxylase 2,HPH-2,Prolyl hydroxylase domain-containing protein 2,PHD2,SM-20
2C, D
(C, D)
Hypoxia-inducible factor 1-alphapolymer191895.22UniProt (Q16665)Homo sapiensHIF1-alpha,ARNT-interacting protein,Basic-helix-loop-helix-PAS protein MOP1,Class E basic helix-loop-helix protein 78,bHLHe78,Member of PAS protein 1,PAS domain-containing protein 8
3E, G
(A, B)
MANGANESE (II) IONnon-polymer54.92Chemie (MN)
4F, H
(A, B)
N-OXALYLGLYCINEnon-polymer147.12Chemie (OGA)
5I, J, K, L
(A, B, C, D)
waterwater18.0224Chemie (HOH)
Sequence modifications
A, B: 181 - 426 (UniProt: Q9GZT9)
PDBExternal DatabaseDetails
Gly 175-expression tag
Ser 176-expression tag
His 177-expression tag
Met 178-expression tag
Ala 179-expression tag
Ser 180-expression tag
Ala 201Cys 201engineered mutation
Cys 281Arg 281engineered mutation
Cys 317Pro 317engineered mutation
Ala 398Arg 398engineered mutation
C, D: 395 - 413 (UniProt: Q16665)
PDBExternal DatabaseDetails
Cys 397Leu 397engineered mutation
Cys 412Asp 412engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight59651.9
Non-Polymers*Number of molecules4
Total formula weight404.0
All*Total formula weight60055.9
*Water molecules are not included.

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PDB entries from 2025-06-11

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