5L46
Crystal structure of human dimethylglycine-dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.972 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 83.377, 119.868, 86.466 |
Unit cell angles | 90.00, 92.58, 90.00 |
Refinement procedure
Resolution | 58.651 - 3.090 |
R-factor | 0.1835 |
Rwork | 0.179 |
R-free | 0.26930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4paa |
RMSD bond length | 0.010 |
RMSD bond angle | 1.373 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.651 | 3.200 |
High resolution limit [Å] | 3.090 | 3.090 |
Rmerge | 0.206 | 0.657 |
Number of reflections | 30495 | |
<I/σ(I)> | 4.81 | 1.53 |
Completeness [%] | 97.7 | 93.81 |
Redundancy | 2.8 | 2.7 |
CC(1/2) | 0.958 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.5 | 293.15 | 10% w/v PEG 20000, 20% v/v PEG MME 550, 0.02 M of each amino acid and 0.1 M MOPS/HEPES-Na pH 7.5 |