5K64
Crystal structure of VEGF binding IgG1-Fc (Fcab 448)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-27 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 92.720, 38.860, 97.200 |
Unit cell angles | 90.00, 94.23, 90.00 |
Refinement procedure
Resolution | 46.230 - 2.440 |
R-factor | 0.2174 |
Rwork | 0.215 |
R-free | 0.24910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jii |
RMSD bond length | 0.004 |
RMSD bond angle | 0.726 |
Data reduction software | XDS (XDS v.Oct-2015) |
Data scaling software | XDS (XDS v.Oct-2015) |
Phasing software | PHENIX (1.10-2247) |
Refinement software | PHENIX (1.10-2247) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.230 | 2.527 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.082 | 1.620 |
Number of reflections | 26251 | |
<I/σ(I)> | 9.12 | 0.75 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4 | 4 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 295 | 0.05 M MES, 10% (w/v) PEG 3350 |