Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5K5J

Homo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure in space group P41212

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2015-06-10
DetectorRAYONIX MX300-HS
Wavelength(s)1.000
Spacegroup nameP 41 21 2
Unit cell lengths58.903, 58.903, 172.264
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.867 - 2.287
R-factor0.2102
Rwork0.208
R-free0.25390
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5k5i
RMSD bond length0.004
RMSD bond angle0.500
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((dev_2400: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.8672.480
High resolution limit [Å]2.2872.390
Rmerge0.0800.965
Number of reflections14269
<I/σ(I)>28.2712.7
Completeness [%]99.9100
Redundancy10.811
CC(1/2)0.906
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.528925% (w/v) polyethylene glycol 3350, 0.2 M ammonium sulfate, and 0.1 M bis-tris HCl, pH 5.5

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon