5K1N
Human TTR altered by a rhenium tris-carbonyl Pyta-C12 derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.175919 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.650, 82.130, 67.720 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.065 - 1.810 |
R-factor | 0.1906 |
Rwork | 0.189 |
R-free | 0.22390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k1j |
RMSD bond length | 0.005 |
RMSD bond angle | 0.819 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.860 |
High resolution limit [Å] | 1.810 | 1.810 |
Rmerge | 0.065 | 0.782 |
Number of reflections | 41147 | |
<I/σ(I)> | 12.31 | 1.69 |
Completeness [%] | 98.2 | 98.4 |
Redundancy | 2.6 | 2.6 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | protein: 10 mg/ml Dialysed in 100 milli-M NaCl, 50 milli-M sodium acetate, pH 5.5 precipitant: 21% polyethylene glycol 4,000 (PEG4K), 0.14 M imidazole malate, pH 6.0 + 3.6% polyethylene glycol monomethyl ether (MPEG5K), 30 mM sodium acetate pH 5.5 cryosoak: 40% SM3 (25 % diethylene glycol + 25 % ethylene glycol + 25 % glycerol + 25 % 1,4-dioxane) 50% PEG 8K and 0.5 milli-M of rhenium tris-carbonyl Pyta-C12 derivative. |