5JY0
Crystal structure of Porphyromonas endodontalis DPP11 in complex with substrate
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE MASSIF-1 |
| Synchrotron site | ESRF |
| Beamline | MASSIF-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-10 |
| Detector | DECTRIS PILATUS3 2M |
| Wavelength(s) | 0.966 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 87.787, 113.331, 111.226 |
| Unit cell angles | 90.00, 106.26, 90.00 |
Refinement procedure
| Resolution | 43.584 - 2.599 |
| R-factor | 0.2187 |
| Rwork | 0.217 |
| R-free | 0.24750 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.119 |
| Data reduction software | XDS |
| Data scaling software | SCALA (3.3.20) |
| Phasing software | PHASER |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 106.775 | 43.584 | 2.740 |
| High resolution limit [Å] | 2.599 | 8.220 | 2.600 |
| Rmerge | 0.039 | 1.211 | |
| Number of reflections | 32005 | ||
| <I/σ(I)> | 7.5 | 14.8 | 0.6 |
| Completeness [%] | 99.2 | 98.9 | 95.9 |
| Redundancy | 3.4 | 3.6 | 3.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Tris-HCl pH 7.5, 15% PEG 6000 |
