5JCB
Microtubule depolymerizing agent podophyllotoxin derivative YJTSF1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-01-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.357, 157.252, 179.631 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.636 - 2.300 |
R-factor | 0.1822 |
Rwork | 0.181 |
R-free | 0.19990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i4t |
RMSD bond length | 0.008 |
RMSD bond angle | 1.035 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 50.000 |
High resolution limit [Å] | 2.300 |
Number of reflections | 131984 |
<I/σ(I)> | 11.6 |
Completeness [%] | 99.9 |
Redundancy | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG 4000, Glycerol, Magnesium chloride, Calcium chloride |