5HL0
Crystal Structure of c-Cbl TKBD in complex with SPRY2 peptide (54-60, pY55) Refined to 2.2A Resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 6 |
Unit cell lengths | 123.180, 123.180, 56.786 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.320 - 2.200 |
R-factor | 0.1923 |
Rwork | 0.190 |
R-free | 0.23660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bum |
RMSD bond length | 0.012 |
RMSD bond angle | 1.090 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.750 | 41.750 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.128 | 0.047 | 1.236 |
Rpim | 0.042 | 0.016 | 0.403 |
Total number of observations | 257967 | 3850 | 22611 |
Number of reflections | 25191 | ||
<I/σ(I)> | 12.1 | 43.4 | 2 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 10.2 | 9.8 | 10.4 |
CC(1/2) | 0.998 | 0.999 | 0.897 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 16% (w/v) PEG 8000, 0.04M Potassium phosphate (monobasic), 20% (v/v) glycerol |