5HKY
Crystal structure of c-Cbl TKBD domain in complex with SPRY2 peptide (36-60, pY55) Refined to 1.8A Resolution (P6 form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-04-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 6 |
Unit cell lengths | 122.810, 122.810, 58.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.199 - 1.800 |
R-factor | 0.158 |
Rwork | 0.157 |
R-free | 0.18010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bum |
RMSD bond length | 0.010 |
RMSD bond angle | 1.030 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.330 | 42.330 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.111 | 0.041 | 1.226 |
Total number of observations | 474170 | 4016 | 27982 |
Number of reflections | 46770 | ||
<I/σ(I)> | 14.8 | 46.2 | 2.2 |
Completeness [%] | 100.0 | 98.8 | 100 |
Redundancy | 10.1 | 9.9 | 10 |
CC(1/2) | 0.999 | 0.999 | 0.718 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 30% (v/v) PEG 400, 0.1M HEPES, 200 mM MgCl2 |