5FFY
Crystal structure of the bromodomain of human BRPF1 in complex with a benzimidazole ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 48.545, 59.869, 51.236 |
Unit cell angles | 90.00, 100.43, 90.00 |
Refinement procedure
Resolution | 23.880 - 1.550 |
R-factor | 0.18475 |
Rwork | 0.183 |
R-free | 0.21270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lc2 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.633 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | REFMAC |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.190 | 1.630 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.037 | 0.402 |
Number of reflections | 20656 | |
<I/σ(I)> | 19.1 | 3.1 |
Completeness [%] | 98.5 | 97.7 |
Redundancy | 3.7 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 277.15 | 0.1 M bis tris propane pH 9, 10% ethylene glycol, 0.15 M sodium nitrate |