5FA5
Crystal Structure of PRMT5:MEP50 in complex with MTA and H4 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-07 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 102.050, 137.850, 178.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 89.220 - 2.340 |
R-factor | 0.1792 |
Rwork | 0.177 |
R-free | 0.22130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gqb |
RMSD bond length | 0.010 |
RMSD bond angle | 1.130 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER-TNT (BUSTER 2.11.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 89.220 | 89.220 | 2.700 |
High resolution limit [Å] | 2.340 | 4.680 | 2.340 |
Rmerge | 0.074 | 0.032 | 0.552 |
Rpim | 0.031 | 0.014 | 0.228 |
Total number of observations | 357014 | 43275 | 125363 |
Number of reflections | 53238 | ||
<I/σ(I)> | 17.2 | 45.7 | 3.1 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 6.7 | 6.3 | 6.8 |
CC(1/2) | 0.999 | 0.999 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 281 | 200 mM ammonium sulfate, 20-28% PEG 3350, 2 mM 5-deoxy-5-(methylthio)adenosine, 1 mM H4 peptide (1-20) |