5EYC
Crystal structure of c-Met in complex with naphthyridinone inhibitor 5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-06-07 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.073, 43.267, 158.020 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.740 - 1.800 |
R-factor | 0.1946 |
Rwork | 0.192 |
R-free | 0.24720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xmo |
RMSD bond length | 0.008 |
RMSD bond angle | 1.156 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AMoRE |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 3.880 | 1.800 |
Rmerge | 0.034 | 0.023 | 0.325 |
Total number of observations | 65999 | ||
Number of reflections | 22824 | ||
<I/σ(I)> | 24.5 | 3.686 | |
Completeness [%] | 82.4 | 93.8 | 37.7 |
Redundancy | 2.9 | 3.8 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 293 | 12% PEG 4000, 3% (v/v) ethanol, 6% (v/v) isopropanol, 40 mM beta-mercaptoethanol, 100 mM HEPES (pH 7.8) |