5EJI
Crystal structure of NAD kinase W78F mutant from Listeria monocytogenes in complex with NADP/Mn++/PPi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-2 |
Synchrotron site | ESRF |
Beamline | ID14-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-09-16 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.933 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 63.466, 74.389, 119.012 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.080 - 2.292 |
R-factor | 0.1789 |
Rwork | 0.177 |
R-free | 0.23690 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.071 |
Data scaling software | SCALA (3.3.21) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.069 | 63.069 | 2.410 |
High resolution limit [Å] | 1.829 | 7.240 | 2.290 |
Rmerge | 0.029 | 0.561 | |
Rmeas | 0.079 | ||
Rpim | 0.039 | 0.020 | 0.363 |
Total number of observations | 53269 | 1617 | 7772 |
Number of reflections | 13007 | ||
<I/σ(I)> | 12.5 | 47.2 | 1.9 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 4.1 | 3.5 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.1 | 294 | 50 mM Sodium Bromide, 150 mM tri-sodium citrate dihydrate, pH 5.1-5.4, 14-16% w/v polyethylene glycol 400 |