5EDW
Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97648 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 98.516, 101.994, 52.864 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.975 - 2.620 |
R-factor | 0.2228 |
Rwork | 0.220 |
R-free | 0.28420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1s0n |
RMSD bond length | 0.005 |
RMSD bond angle | 0.755 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((1.10_2142: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.670 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmerge | 0.097 | |
Number of reflections | 16600 | |
<I/σ(I)> | 23.25 | 1.82 |
Completeness [%] | 99.9 | |
Redundancy | 10.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 295 | 12 to 18% PEG 3350, 100 mM HEPES, 100 mM calcicum acetate, and 2.5% glycerol |