5E3C
Structure of human DPP3 in complex with hemorphin like opioid peptide IVYPW
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID29 |
| Synchrotron site | ESRF |
| Beamline | ID29 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-20 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.972390 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 120.669, 106.386, 65.121 |
| Unit cell angles | 90.00, 93.44, 90.00 |
Refinement procedure
| Resolution | 45.560 - 2.765 |
| R-factor | 0.2064 |
| Rwork | 0.204 |
| R-free | 0.25280 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3t6b |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.507 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | PHENIX (1.9_1692) |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 45.560 | 2.860 |
| High resolution limit [Å] | 2.760 | 2.760 |
| Rmerge | 0.211 | 0.502 |
| Number of reflections | 20651 | |
| <I/σ(I)> | 4.39 | 1.44 |
| Completeness [%] | 97.9 | 84.87 |
| Redundancy | 3.8 | 3.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.2 | 293 | 0.056 Sodium phosphate monobasic monohydrate, 1.344M Potassium phosphate dibasic |
