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5DG5

CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITH ALTIRATINIB ANALOG DP-4157

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2009-04-17
DetectorADSC QUANTUM 315r
Wavelength(s)0.9999
Spacegroup nameP 1 21 1
Unit cell lengths37.130, 115.880, 90.160
Unit cell angles90.00, 92.92, 90.00
Refinement procedure
Resolution19.650 - 2.600
R-factor0.2057
Rwork0.204
R-free0.24490
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2g15
RMSD bond length0.008
RMSD bond angle1.196
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.0002.780
High resolution limit [Å]2.6007.3502.600
Rmerge0.1000.0240.689
Rmeas0.1200.0290.827
Total number of observations73855
Number of reflections230769764221
<I/σ(I)>11.3637.651.97
Completeness [%]98.391.899.3
Redundancy3.23.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290Protein at 9.5mg/ml in 20 mM Tris pH 8.5, 100mM NaCl, 14mM 2-mercaptoethanol with 5-molar excess of compound; crystallization condition: 1.0M diammonium hydrogen phosphate, 0.2M sodium chloride, 0.1M citrate pH 5.0 and 7.5% glycerol

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