5D80
Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-10 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.6279 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 468.020, 159.650, 248.270 |
Unit cell angles | 90.00, 113.75, 90.00 |
Refinement procedure
Resolution | 39.720 - 6.202 |
R-factor | 0.2573 |
Rwork | 0.255 |
R-free | 0.30180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bw9 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.623 |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER |
Refinement software | PHENIX (dev-1957) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.720 | 39.720 | 6.340 |
High resolution limit [Å] | 6.010 | 19.020 | 6.010 |
Rmerge | 0.258 | 0.225 | 4.349 |
Rpim | 0.083 | 0.085 | 1.367 |
Total number of observations | 463370 | 11036 | 65486 |
Number of reflections | 41729 | ||
<I/σ(I)> | 11 | 37.5 | 0.6 |
Completeness [%] | 99.3 | 89.2 | 97.5 |
Redundancy | 11.1 | 8.9 | 11 |
CC(1/2) | 0.981 | 0.928 | 0.232 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 8.25% PEG 8000, 0.25 M Ammonium Sulfate, 0.1 M HEPES pH 7.5, 0.05 M Strontium Chloride |